Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs11430424 chr7:158811429 A/AC 1.41E-7 114 38.83 38.53 12.63 KM Plot
THYM rs114545645 chr9:97145925 A/G 7.78E-5 119 41.77 40.43 17.03 KM Plot
THYM rs114562844 chr3:52991584 C/T 0.000238 118 44.38 23.75 25.63 KM Plot
THYM rs11463912 chr14:78287612 A/AC 0.000164 119 24.17 46.43 38.33 KM Plot
THYM rs114669221 chr4:6301459 G/A 8.49E-6 115 25.83 38.83 50.07 KM Plot
THYM rs114831513 chr9:97172699 C/T 7.78E-5 119 41.77 40.43 17.03 KM Plot
THYM rs114845567 chr10:1541581 A/C 0.000185 117 39.5 42.82 25.83 KM Plot
THYM rs114892953 chr7:29676298 G/A 4.22E-13 119 38.23 46.07 6 KM Plot
THYM rs114901458 chr4:70043767 G/T 7.82E-13 117 39.75 42.3 6 KM Plot
THYM rs114921738 chr14:40230593 C/A 4.0E-6 119 41.22 42.73 23.63 KM Plot
THYM rs11530594 chr11:125577292 T/C 0.000188 119 44.38 35.67 23.42 KM Plot
THYM rs11530764 chr11:125577201 A/G 0.000188 119 44.38 35.67 23.42 KM Plot
THYM rs11533186 chr11:125577817 C/G 0.000188 119 44.38 35.67 23.42 KM Plot
THYM rs115343117 chr20:29518019 G/A 2.67E-13 118 38.13 50.53 6 KM Plot
THYM rs115369413 chr7:29685040 T/G 5.34E-13 118 38.58 45.87 6 KM Plot